Here is the full list of all 99 Time Clickers achievements. It takes around 200 hours to unlock all of the achievements on Windows.
Time Warp 250 Times
Collect 3.00M Weapon Cubes
Defeat Wave 4,000 Boss
Beat Wave 3,500
Beat Wave 3,000
Defeat Wave 3,000 Boss
Get a Team Member to Spec Ops 5 (LVL 5,000)
Collect 5.00M Time Cubes
Beat Wave 2,750
Upgrade a Team Member 25.0K Times
Time Warp 100 Times
Beat Wave 2,450
Beat Wave 2,150
Get a Team Member to Spec Ops 4 (LVL 4,000)
Defeat Wave 2,000 Boss
Destroy 1,000 Rainbow Balls
Destroy 75.0M Cubes
Upgrade a Team Member 12.5K Times
Beat Wave 1,850
Beat Wave 1,550
Get a Team Member to Spec Ops 3 (LVL 3,000)
Beat Wave 1,350
Time Warp 50 Times
Upgrade a Team Member 5.00K Times
Beat Wave 1,150
Defeat Wave 1,000 Boss
Beat Wave 950
Beat Wave 750
Get a Team Member to Spec Ops 2 (LVL 2,000)
Collect 1.00t Gold (Total)
Collect 1.00r Gold (Total)
Time Warp 25 Times
Upgrade a Team Member 2.00K Times
Defeat Wave 500 Boss
Collect 1.00p Gold (Total)
Collect 1.00n Gold (Total)
Collect 1.00l Gold (Total)
Destroy 1.50M Yellow Cubes
Destroy 50.0M Cubes
Collect 999i Gold (Total)
Destroy 150K Yellow Cubes
Destroy 5.00M Cubes
Defeat Wave 250 Boss
Get a Team Member to Spec Ops 1 (LVL 1,000)
Collect 999g Gold (Total)
Time Warp 10 Times
Destroy 1.00M White Cubes
Get Team DPS to 10.0f
Shoot Click Pistol 250K Times
Get 10.0K Critical Strikes
Get Team DPS to 10.0e
Earn 50.0e Gold
Collect 999e Gold (Total)
Beat Wave 550
Shoot Click Pistol 100K Times
Beat Wave 350
Get Team DPS to 10.0d
Beat Wave 200
Collect 1.00d Gold (Total)
Time Warp 5 Times
Get Team DPS to 10.0c
Upgrade a Team Member 500 Times
Shoot Click Pistol 50.0K Times
Time Warp 3 Times
Destroy 500K Red Cubes
Destroy 100K White Cubes
Destroy 500K Cubes
Get Team DPS to 10.0b
Get 1.00K Critical Strikes
Destroy 5,000 Rainbow Cubes
Upgrade a Team Member 125 Times
Destroy 50.0K Red Cubes
Time Warp 1 Time
Beat Wave 100
Defeat Wave 100 Boss
Earn 250a Gold
Get Team DPS to 10.0a
Get Team DPS to 10.0Q
Get Team DPS to 10.0T
Collect 1.00Q Gold (Total)
Earn 5.00T Gold
Upgrade a Team Member 50 Times
Beat Wave 50
Get Team DPS to 10.0B
Destroy 50.0K Cubes
Get 100 Critical Strikes
Collect 1.00B Gold (Total)
Upgrade a Team Member 25 Times
Get Team DPS to 10.0M
Beat Wave 25
Shoot Click Pistol 10.0K Times
Upgrade a Team Member 5 Times
Earn 500K Gold
Collect 1.00M Gold (Total)
Destroy 5.00K Cubes
Shoot Click Pistol 1.00K Times
Beat Wave 10
Shoot Click Pistol 500 Times
Shoot Click Pistol 100 Times