Here is the full list of all 32 System Protocol One achievements.
Fire 10 million multiplexer lasers.
Find and activate all switches.
Beat Guacamole on Frumious.
An adaptive virus boss reaches a DataCore with less than 1% of its health.
Kill a total of 500 Code Injector infected viruses with Honeypots.
Build at least one of every structure on a server (and win).
Beat the About level.
Successfully defend a server using only Walls and Firewalls.
Beat 15 levels on Normal.
Beat every level on Frumious.
Get a #1 score.
Manually advance every wave in a server and successfully defend it, while playing on Frumious difficulty.
Destroy 5000 background viruses.
Build a Honeypot that grows to 50 damage per second.
Kill a total of 500 Code Injector infected viruses with Compressor blasts.
Beat 15 levels on Easy.
A single Sudo Kill Command destroys 50 viruses.
Have two adjacent Compressors trigger at the same instant.
Destroy 50 viruses with a single, fully charged Compressor strike.
Destroy 5000 adaptive viruses.
Destroy 5000 hardened viruses.
Stun boss viruses 250 times.
Destroy 5000 overclocked viruses.
Destroy 5000 refurb viruses.
Beat Stream Lattice on Frumious.
Successfully defend a server without building any Ping Cannons or Multiplexers.
Destroy 5000 stock viruses.
Kill more than 500 viruses in a server with Pyramid Antivirus™ nodes.
Get a top 10 score.
Manually advance ever wave in a server and successfully defend it.
Kill 250 Background Viruses with Ping Cannons.
Play through the tutorial.