Here is the full list of all 18 Midnight Protocol achievements.
Beat Whisper
Patched Punditgen
Break into a Monarch and Reiter
Saved family from certain doom
Completely dismantle the LoveBot network
Finish act I
Finish the tutorial
Finish act II
Finish act III
Beat The Morrigan
Find the Vorpal Sword program
Kill Pavo
Set Pavo free
Stop a train
Cause a hospital blackout
Words left unspoken
Finish the Recursive II challenge
Destroy the Golem