Here is the full list of all 52 EGO PROTOCOL achievements.
Clear World 1: Mines
Clear World 2: Science Lab
Clear World 3: Workshop
Clear World 4: Officers' Deck
Clear World 5: Mainframe
Clear 15 stages
Clear 30 stages
Clear 45 stages
Clear 60 stages
Perfect clear World 1: Mines
Perfect clear World 2: Science Lab
Perfect clear World 3: Workshop
Perfect clear World 4: Officers' Deck
Perfect clear World 5: Mainframe
Perfect clear 15 stages
Perfect clear 30 stages
Perfect clear 45 stages
Perfect clear 60 stages
Finish the tutorial
Collect 10 Ego Fragments
Collect 100 Ego Fragments
Collect 1000 Ego Fragments
Collect 5 Time-Stoppers
Collect 20 Time-Stoppers
Collect 100 Time-Stoppers
Kill 5 Robots
Kill 50 Robots
Kill 500 Robots
Open 5 Blast Doors
Open 20 Blast Doors
Open 100 Blast Doors
Teleport 5 times
Teleport 20 times
Teleport 100 times
Die 5 times
Die 50 times
Die 500 times
Die 5 times on a Mine
Die 20 times on a Mine
Die 100 times on a Mine
Fall out of stage
Get stuck
Run for 10 seconds
Run from start to exit
Kill a robot from far away
Kill a robot from very far away
Fall from a high place
Clear a stage without shooting enemies
Clear a stage in over 500s
Walk through a tile with a cannon without stopping
Die in the tutorial
Get all other achievements