Here is the full list of all 99 Time Clickers achievements. It takes around 200 hours to unlock all of the achievements on Windows.
Time Warp 250 Times
Destroy 75.0M Cubes
Defeat Wave 4,000 Boss
Beat Wave 3,500
Collect 3.00M Weapon Cubes
Defeat Wave 3,000 Boss
Beat Wave 3,000
Get a Team Member to Spec Ops 5 (LVL 5,000)
Beat Wave 2,750
Destroy 50.0M Cubes
Time Warp 100 Times
Beat Wave 2,450
Collect 5.00M Time Cubes
Upgrade a Team Member 25.0K Times
Get a Team Member to Spec Ops 4 (LVL 4,000)
Destroy 1.50M Yellow Cubes
Beat Wave 2,150
Time Warp 50 Times
Upgrade a Team Member 12.5K Times
Defeat Wave 2,000 Boss
Beat Wave 1,850
Beat Wave 1,550
Get a Team Member to Spec Ops 3 (LVL 3,000)
Upgrade a Team Member 5.00K Times
Destroy 1,000 Rainbow Balls
Beat Wave 1,350
Time Warp 25 Times
Beat Wave 1,150
Defeat Wave 1,000 Boss
Beat Wave 750
Beat Wave 950
Destroy 5.00M Cubes
Get a Team Member to Spec Ops 2 (LVL 2,000)
Collect 1.00t Gold (Total)
Collect 1.00r Gold (Total)
Defeat Wave 500 Boss
Collect 1.00p Gold (Total)
Collect 1.00n Gold (Total)
Collect 1.00l Gold (Total)
Collect 999i Gold (Total)
Get a Team Member to Spec Ops 1 (LVL 1,000)
Collect 999g Gold (Total)
Defeat Wave 250 Boss
Destroy 500K Red Cubes
Destroy 1.00M White Cubes
Destroy 150K Yellow Cubes
Upgrade a Team Member 2.00K Times
Get Team DPS to 10.0f
Shoot Click Pistol 250K Times
Collect 999e Gold (Total)
Beat Wave 550
Get Team DPS to 10.0e
Destroy 500K Cubes
Time Warp 10 Times
Earn 50.0e Gold
Beat Wave 350
Get Team DPS to 10.0d
Get 10.0K Critical Strikes
Time Warp 5 Times
Beat Wave 200
Collect 1.00d Gold (Total)
Get Team DPS to 10.0c
Shoot Click Pistol 100K Times
Destroy 100K White Cubes
Upgrade a Team Member 500 Times
Time Warp 3 Times
Destroy 5,000 Rainbow Cubes
Get Team DPS to 10.0b
Defeat Wave 100 Boss
Beat Wave 100
Destroy 50.0K Red Cubes
Shoot Click Pistol 50.0K Times
Upgrade a Team Member 125 Times
Time Warp 1 Time
Earn 250a Gold
Get Team DPS to 10.0a
Destroy 50.0K Cubes
Get 1.00K Critical Strikes
Get Team DPS to 10.0Q
Collect 1.00Q Gold (Total)
Get Team DPS to 10.0T
Earn 5.00T Gold
Upgrade a Team Member 50 Times
Beat Wave 50
Get Team DPS to 10.0B
Get 100 Critical Strikes
Upgrade a Team Member 25 Times
Collect 1.00B Gold (Total)
Get Team DPS to 10.0M
Shoot Click Pistol 10.0K Times
Beat Wave 25
Upgrade a Team Member 5 Times
Earn 500K Gold
Collect 1.00M Gold (Total)
Destroy 5.00K Cubes
Beat Wave 10
Shoot Click Pistol 1.00K Times
Shoot Click Pistol 500 Times
Shoot Click Pistol 100 Times