Here is the full list of all 99 Time Clickers achievements. It takes around 200 hours to unlock all of the achievements on Windows.
Collect 3.00M Weapon Cubes
Beat Wave 3,000
Defeat Wave 3,000 Boss
Time Warp 100 Times
Get a Team Member to Spec Ops 5 (LVL 5,000)
Beat Wave 2,750
Collect 5.00M Time Cubes
Upgrade a Team Member 25.0K Times
Beat Wave 2,450
Beat Wave 2,150
Get a Team Member to Spec Ops 4 (LVL 4,000)
Defeat Wave 2,000 Boss
Beat Wave 1,850
Destroy 1,000 Rainbow Balls
Destroy 75.0M Cubes
Upgrade a Team Member 12.5K Times
Time Warp 50 Times
Beat Wave 1,550
Get a Team Member to Spec Ops 3 (LVL 3,000)
Beat Wave 1,350
Destroy 50.0M Cubes
Beat Wave 1,150
Beat Wave 950
Defeat Wave 1,000 Boss
Time Warp 25 Times
Upgrade a Team Member 5.00K Times
Beat Wave 750
Get a Team Member to Spec Ops 2 (LVL 2,000)
Collect 1.00t Gold (Total)
Shoot Click Pistol 250K Times
Time Warp 10 Times
Upgrade a Team Member 2.00K Times
Collect 1.00p Gold (Total)
Collect 1.00r Gold (Total)
Beat Wave 550
Defeat Wave 500 Boss
Shoot Click Pistol 100K Times
Time Warp 5 Times
Collect 1.00n Gold (Total)
Earn 50.0e Gold
Collect 999e Gold (Total)
Collect 999g Gold (Total)
Collect 999i Gold (Total)
Collect 1.00l Gold (Total)
Beat Wave 200
Beat Wave 350
Defeat Wave 250 Boss
Get Team DPS to 10.0d
Get Team DPS to 10.0e
Get Team DPS to 10.0f
Shoot Click Pistol 50.0K Times
Get 10.0K Critical Strikes
Time Warp 3 Times
Upgrade a Team Member 500 Times
Destroy 500K Red Cubes
Destroy 1.00M White Cubes
Destroy 150K Yellow Cubes
Destroy 1.50M Yellow Cubes
Destroy 5.00M Cubes
Get a Team Member to Spec Ops 1 (LVL 1,000)
Time Warp 1 Time
Earn 250a Gold
Collect 1.00d Gold (Total)
Beat Wave 100
Defeat Wave 100 Boss
Get Team DPS to 10.0Q
Get Team DPS to 10.0a
Get Team DPS to 10.0b
Get Team DPS to 10.0c
Shoot Click Pistol 10.0K Times
Get 1.00K Critical Strikes
Upgrade a Team Member 125 Times
Destroy 100K White Cubes
Destroy 500K Cubes
Get 100 Critical Strikes
Collect 1.00Q Gold (Total)
Get Team DPS to 10.0T
Earn 5.00T Gold
Upgrade a Team Member 50 Times
Beat Wave 50
Destroy 5,000 Rainbow Cubes
Get Team DPS to 10.0B
Destroy 50.0K Red Cubes
Collect 1.00B Gold (Total)
Destroy 50.0K Cubes
Upgrade a Team Member 25 Times
Get Team DPS to 10.0M
Beat Wave 25
Earn 500K Gold
Collect 1.00M Gold (Total)
Beat Wave 10
Shoot Click Pistol 100 Times
Shoot Click Pistol 500 Times
Shoot Click Pistol 1.00K Times
Upgrade a Team Member 5 Times
Destroy 5.00K Cubes
Time Warp 250 Times
Beat Wave 3,500
Defeat Wave 4,000 Boss